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Category: Journal Papers

DeepCAN: A Modular Deep Learning System for Automated Cell Counting and Viability Analysis

September 1, 2022September 7, 2022 akiraz

Furkan Eren, Mete Aslan, Dilek Kanarya, Yigit Uysalli, Musa Aydin, Berna Kiraz, Omer Aydin, and Alper Kiraz
IEEE J. Biomed. Health. Inform., to appear (2022)
DOI: 10.1109/JBHI.2022.3203893 (PDF)

An LED-Based Structured Illumination Microscope Using a Digital Micromirror Device and GPU Accelerated Image Reconstruction

August 23, 2022September 11, 2022 akiraz

Musa Aydın, Yiğit Uysallı, Ekin Özgönül, Berna Morova, Fatmanur Tiryaki, Elif Nur Firat-Karalar, Buket Doğan, and Alper Kiraz
PLOS ONE, to appear (2022)
DOI: 10.1371/journal.pone.0273990 (PDF)

Understanding the link between inflammasome and apoptosis through the response of THP-1 cells against drugs using droplet-based microfluidics

April 16, 2022August 23, 2022 akiraz

Elif Gencturk, Müge Kasım, Berna Morova, Alper Kiraz, and Kutlu Ulgen
ACS Omega 7 (19), 16323–16332 (2022)
DOI: 10.1021/acsomega.1c06569 (PDF)

A Deep Learning Model for Automated Segmentation of Fluorescence Cell images

January 29, 2022August 23, 2022 akiraz

Musa Aydın, Berna Kiraz, Furkan Eren, Yigit Uysalli, Berna Morova, Selahattin Can Ozcan, Ceyda Acilan, and Alper Kiraz
J. Phys.: Conf. Ser. 2191, 012003 (2022)
DOI: 10.1088/1742-6596/2191/1/012003 (PDF)

An easy-to-fabricate microfluidic shallow trench induced three-dimensional cell culturing and imaging (STICI3D) platform

January 29, 2022August 23, 2022 akiraz

Umut Coskun, Funda Kus, Ateeq Ur Rehman, Berna Morova, Merve Gulle, Hatice Baser, Demet Kul, Alper Kiraz, Kemal Baysal, and Ahmet Erten
ACS Omega 7 (10), 8281−8293 (2022)
DOI: 10.1021/acsomega.1c05118 (PDF)

Use of an Elastic Buffer Layer for Improved Performance of a Polymer Microcylinder Ring Resonator Hydrogen Sensor

January 15, 2022February 14, 2022 akiraz

N. Bavili, B. Ali, B. Morova, B. E. Alaca, and A. Kiraz
Sensor. Actuat. B-Chem. 358, 131431 (2022)
DOI: 10.1016/j.snb.2022.131431 (PDF)

Optically Transportable Optofluidic Microlasers with Liquid Crystal Cavities Tuned by the Electric Field

October 11, 2021November 3, 2021 akiraz

Alexandr Jonáš, Zdenek Pilat, Jan Jezek, Silvie Bernatov, Petr Jedlika, Mehdi Aas, Alper Kiraz, Pavel Zemanek
ACS Appl. Mater. Interfaces 3 (43), 50657-50667 (2021) 
DOI: 10.1021/acsami.1c11936 (PDF)

Linear Cavity Tapered Fiber Sensor Using Amplified Phase-Shift Cavity Ring-Down Spectroscopy

April 6, 2021October 11, 2021 akiraz

R. M. A. Ayaz, Y. Uysalli, B. Morova, and A. Kiraz
J. Opt. Soc. Am. B 38 (6), 1756-1762 (2021) 
DOI: 10.1364/JOSAB.419768 (PDF)

Detection of aflatoxin M1 by fiber cavity attenuated phase shift spectroscopy

January 25, 2021January 25, 2021 akiraz

M. Daniyal Ghauri, Syed Zajif Hussain, Ubaid Ullah, Rana M. Armaghan Ayaz, Rahman Shah Zaib Saleem, Alper Kiraz, and M. Imran Cheema
Opt. Express 29 (3), 3873-3881 (2021)
DOI: 10.1364/OE.408975 (PDF)

Microfluidics for Microalgal Biotechnology

January 2, 2021May 2, 2021 akiraz

B. Ozdalgic, M. Ustun, A. Kiraz, B. Z. Haznedaroglu, and S. Tasoglu
Biotechnol. Bioeng. 118 (4), 1545-1563 (2021)
DOI: 10.1002/bit.27669 (PDF)

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Recent Papers

  • DeepCAN: A Modular Deep Learning System for Automated Cell Counting and Viability Analysis
  • An LED-Based Structured Illumination Microscope Using a Digital Micromirror Device and GPU Accelerated Image Reconstruction
  • Understanding the link between inflammasome and apoptosis through the response of THP-1 cells against drugs using droplet-based microfluidics
  • A Deep Learning Model for Automated Segmentation of Fluorescence Cell images

@kirazlab @kirazlab

  • It was a great honor to give a seminar in IBG İzmir yesterday. https://t.co/tQd1sG7TUE,
  • Koç University Optofluidics and Nano-Optics Research Laboratory, 2019 Edition https://t.co/udKr4MA7WC,
  • https://t.co/QtLWBHjovZ,
  • The costs of academic publishing are absurd. The University of California is fighting back. https://t.co/4lZMxDAUPY via @voxdotcom,

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